GgaEX0026374 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C495]
Coordinates
chr14:2257315-2258784:+
Coord C1 exon
chr14:2257315-2257499
Coord A exon
chr14:2258187-2258328
Coord C2 exon
chr14:2258594-2258784
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTGTCTTCTCCCAGGGT
3' ss Score
11.91
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
AAAAGGTGCAGGAGGAGATTGGAAGAACTGTCAAAGCTGGAAGCTGGGTGACGTACGAGGACCGCAAGAACATGCCATTTACAAACGCGGTGATCCACGAAGTGCAGAGGTTCATCACCCTCCTGCCCCACGTTCCCCGCTGCACTGCTGTGGACACCCACTTCAGGGGATACTTCCTTCCCAAG
Seq A exon
GGTATAATTGTCATCCCATCGCTCACCTCAGTGCTGCTGGATAAGACTCAGTGGGAGACACCACACCAGTTCAACCCCAACCACTTCCTTGATGCTGAAGGGAATTTTGTCAAGAGGGAGGCTTTCCTGCCCTTCTCCACAG
Seq C2 exon
GGCGAAGGAACTGCATCGGAGAGAGCCTCGCCAAGATGGAGCTGTTTGTCTTCTTTGTAGGGCTGCTGCAGACGTTCACTTTCCAACCTCAGCCGGGAGTTTCAGAGGCCGACCTGGACCTGACCGTCCCCGAAACGACTTTCACATTAAGGCCTCGGCCTCAGGCGACCTGTGCCATCCTGCACGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238-'12-11,'12-9,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCAGGAGGAGATTGGAA
R:
TGCAGCAGCCCTACAAAGAAG
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]