BtaEX6111345 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42306360-42307147:-
Coord C1 exon
chr25:42306963-42307147
Coord A exon
chr25:42306656-42306797
Coord C2 exon
chr25:42306360-42306541
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTCACCTGGCGCCCCCACAGGGC
3' ss Score
8.43
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCCGTGTGCAGGAGGAGCTGGACCGCGTGCTGGGGCCCGCGCGGCTCCCGCGGCCAGAGGACGTGCACGCCCTGCCCTATACTAACGCCGTGCTGCACGAAGTGCAGCGCTTCATCACGCTGCTGCCCCACGCGCCGCGGTGCACGGTCGCCAACACCCAGCTGGGCCCCTACCTGCTCCCCAAG
Seq A exon
GGCACACCCGTGCTGGCCCTACTGAACTCCGTGCTCCTGGACGAGACGCAGTGGAAGACGCCCCGCCAGTTCAACCCGGGCCACTTCCTGGACGCCAACGGGCGCTTCGTCAAGCGGCCGGCTTTCCTGCCTTTCTCCGCAG
Seq C2 exon
GCCGCCGCGTCTGCGTGGGGGAGAGCCTGGCCAGGTCGGAGCTGTTCCTCCTGTTCGCGGGCCTCCTGCAGAGGTACCGCCTGCTGCCCCCGCCTGGCCTCAGCGTCGCCGCCCTGGACACCACGCCTGCCCCTGCCTTCACCGCGCGGCCATCCGCTCAGGTGCTGTGCGCCATGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.5=93.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGCAGCGCTTCATCACG
R:
CACAGCACCTGAGCGGATG
Band lengths:
256-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]