DreEX6015439 @ danRer10
Exon Skipping
Gene
ENSDARG00000098995 | cyp2k6
Description
cytochrome P450, family 2, subfamily K, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1571]
Coordinates
chr3:12670086-12672909:+
Coord C1 exon
chr3:12670086-12670246
Coord A exon
chr3:12672486-12672665
Coord C2 exon
chr3:12672768-12672909
Length
180 bp
Sequences
Splice sites
3' ss Seq
TATTATGTGCTTGTTTGTAGATC
3' ss Score
8.77
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GAAACCCATTTGAAACAAAACTGCCCTTAGCCTTGGCCATTTCGAACATCATCGCTTCAATTGTCTTCAGCGTCAGATTTGAGTACAGCAACACTAAGTTACATCGCATGGTCGGACGGGCTTATGAAAACATGAAGTTGACTGGATCTCCTTCTGTTCAG
Seq A exon
ATCTACAACATGTTCCCTTGGCTTCGTCCCATTGTGGCGAATCGGAATCAAATTGTGAAGAATCTCAGAGATACCTTTAAACAAAATGAGGAATTAATAAATGGTGTAATGAAGACTTTGGACCCTTTTAACCCCAGAGGAATTGTTGACAGTTTCCTCATACGACAGCAGAAGGATGAG
Seq C2 exon
GAATCTGGCAAAACAGACTCACTGTACAATTCAAACAATTTATATTGTACTGTTAACAACCTGTTCGGGGCTGGTACCGATACTACAGTCACAACATTACGTTGGGGTCTTCTGCTAATGGCCAAATACCCTGAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098995-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
PF0006717=p450=FE(12.9=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTGGCCATTTCGAACAT
R:
GCCATTAGCAGAAGACCCCAA
Band lengths:
255-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]