DreEX6016607 @ danRer10
Exon Skipping
Gene
ENSDARG00000022531 | ntn1b
Description
netrin 1b [Source:ZFIN;Acc:ZDB-GENE-990415-168]
Coordinates
chr3:25644434-25683274:-
Coord C1 exon
chr3:25683029-25683274
Coord A exon
chr3:25681864-25682914
Coord C2 exon
chr3:25644434-25644622
Length
1051 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTGTTGACTAGTGC
3' ss Score
6.71
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GCAGAAAGAGAGAAGGGCTGAGCTGCGACACTCACTCACAGAGAGGCAGAGGTGTGAAAGAGTTAGGCAGAGGAAGAAAGGCAGACTTGGAAAGTAATAGCAGGTTTTCTGTTTCATATTGCTTGAAAGTGGGGAAAGAGATTACAACATATCCGGGAGAGAGAAAAGAAAGGGAGAGTACCCTATAATTTCTCTTTTAGACGGGTTTGACATACTTCTCCACCCGGGTGAAGCAGTCTCTTTGAG
Seq A exon
TGCAGGTTCAGGGACCCCTGAGGACCACGGGTTGCAATGATAAGGATTTTGGTAACGTGCGTCTCCATGGTGTCCATCACCTCGATGGTGTCCGGTGCTCGCGGTGGATACGGGATGAGCATGTTCGCGGCTCAGTCCTCTCCTCCGGACCCGTGCTACGACGAGAACGGGAACCCCAGACGCTGCATCCCCGACTTCGTGAACTCCGCTTTCGGGAAGGACGTGCGCGTGTCCAGCACCTGCGGCTCTCCTCCGTCGCGCTACTGCGTGGTGACCGAGAAAGGCGAGGAGAGATCGAGGGACTGCAACATCTGCGACGCCACAGACCCCAAAAAGACCCATCCGCCCGCATACCTGACAGACCTCAACAACCCTCATAACCTCACCTGCTGGCAGTCGGAGAACTACGTGCAATACCCGCAGAACGTGACTCTGACTCTGTCTTTGGGGAAGAAGTTTGAAGTGACTTATGTGAGCCTCCAGTTCTGCTCTCCTCGCCCCGAATCCATGGCCATCTTCAAATCCATGGACTATGGGAAAACCTGGGTGCCTTTTCAGTTCTACTCAACCCAGTGCAAGAAAATGTACAACAAGCCCAGCAAAGCTGCCATCACCAAGCAGAACGAGCAGGAGGCGATCTGCACGGACTCTCACACGGACATGCAGCCGTTAACCGGCGGCCTCATCGCGTTCAGCACGCTGGATGGCAGACCGTCCGCGCACGACTTCGACAACTCGCCCGTCCTGCAGGACTGGGTCACGGCCACCGACATCAAAGTGACCTTCAACCGGCTGCACACGTTCGGGGATGAGAACGAGGACGATTCGGAGCTCGCCAGGGACTCGTATTTTTACGCGGTGTCTGACCTGCAGGTCGGTGGACGGTGTAAGTGTAACGGGCACGCGTCGAAGTGCGTGAAGGACCGGGAAGGAAACCTAGTGTGCGAATGCAAGCACAACACTGCGGGACCAGAGTGTGACAGGTGTAAACCCTTCCACTACGACCGGCCCTGGCAGCGCGCGACTGCCAGAGAGGCGAACGAGTGTGTCG
Seq C2 exon
CTTGTCACTGTAACCTACATGCCCGCCGCTGCCGCTTCAACATGGAGCTGTATAAGTTGTCAGGCCGCAGGAGTGGAGGAGTCTGCCTGAACTGCAGACACAACACCGCCGGACGCCACTGCCACTACTGTAAAGAGGGCTACTACAGAGACATGAGCAAGGCTATATCACACCGACGTGCATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022531-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.050 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0005512=Laminin_N=WD(100=68.7),PF0005319=Laminin_EGF=WD(100=15.9)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGACACTCACTCACAGAGA
R:
TTTACAGTAGTGGCAGTGGCG
Band lengths:
357-1408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]