HsaEX6020929 @ hg19
Exon Skipping
Gene
ENSG00000065320 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:8029]
Coordinates
chr17:8924859-9066318:+
Coord C1 exon
chr17:8924859-8924902
Coord A exon
chr17:8925628-8926708
Coord C2 exon
chr17:9066130-9066318
Length
1081 bp
Sequences
Splice sites
3' ss Seq
CAGCTCCCTTCTCTCCGCAGGCG
3' ss Score
11.72
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CTTCGGGGGCGAGCGCGCGTGTGTGTGAGTGCGCGCCGGCCAGC
Seq A exon
GCGCCTTCTGCGGCAGGCGGACAGATCCTCGGCGCGGCAGGGCCGGGGCAAGCTGGACGCAGCATGATGCGCGCAGTGTGGGAGGCGCTGGCGGCGCTGGCGGCGGTGGCGTGCCTGGTGGGCGCGGTGCGCGGCGGGCCCGGGCTCAGCATGTTCGCGGGCCAGGCGGCGCAGCCCGATCCCTGCTCGGACGAGAACGGCCACCCGCGCCGCTGCATCCCGGACTTTGTCAATGCGGCCTTCGGCAAGGACGTGCGCGTGTCCAGCACCTGCGGCCGGCCCCCGGCGCGCTACTGCGTGGTGAGCGAGCGCGGCGAGGAGCGGCTGCGCTCGTGCCACCTCTGCAACGCGTCCGACCCCAAGAAGGCGCACCCGCCCGCCTTCCTCACCGACCTCAACAACCCGCACAACCTGACGTGCTGGCAGTCCGAGAACTACCTGCAGTTCCCGCACAACGTCACGCTCACACTGTCCCTCGGCAAGAAGTTCGAAGTGACCTACGTGAGCCTGCAGTTCTGCTCGCCGCGGCCCGAGTCCATGGCCATCTACAAGTCCATGGACTACGGGCGCACGTGGGTGCCCTTCCAGTTCTACTCCACGCAGTGCCGCAAGATGTACAACCGGCCGCACCGCGCGCCCATCACCAAGCAGAACGAGCAGGAGGCCGTGTGCACCGACTCGCACACCGACATGCGCCCGCTCTCGGGCGGCCTCATCGCCTTCAGCACGCTGGACGGGCGGCCCTCGGCGCACGACTTCGACAACTCGCCCGTGCTGCAGGACTGGGTCACGGCCACAGACATCCGCGTGGCCTTCAGCCGCCTGCACACGTTCGGCGACGAGAACGAGGACGACTCGGAGCTGGCGCGCGACTCGTACTTCTACGCGGTGTCCGACCTGCAGGTGGGCGGCCGGTGCAAGTGCAACGGCCACGCGGCCCGCTGCGTGCGCGACCGCGACGACAGCCTGGTGTGCGACTGCAGGCACAACACGGCCGGCCCGGAGTGCGACCGCTGCAAGCCCTTCCACTACGACCGGCCCTGGCAGCGCGCCACAGCCCGCGAAGCCAACGAGTGCGTGG
Seq C2 exon
CCTGTAACTGCAACCTGCATGCCCGGCGCTGCCGCTTCAACATGGAGCTCTACAAGCTTTCGGGGCGCAAGAGCGGAGGTGTCTGCCTCAACTGTCGCCACAACACCGCCGGCCGCCACTGCCATTACTGCAAGGAGGGCTACTACCGCGACATGGGCAAGCCCATCACCCACCGGAAGGCCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000065320-'0-1,'0-0,2-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0005512=Laminin_N=WD(100=68.5),PF0005319=Laminin_EGF=WD(100=15.9)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGTGTGAGTGCGCG
R:
CTTTGCAGGCCTTCCGGTG
Band lengths:
216-1297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)