DreEX6019981 @ danRer10
Exon Skipping
Gene
ENSDARG00000102362 | slc25a12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
Coordinates
chr6:3811438-3813059:-
Coord C1 exon
chr6:3812921-3813059
Coord A exon
chr6:3812744-3812837
Coord C2 exon
chr6:3811438-3811522
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTCTCCATTTGTAGAGG
3' ss Score
10.33
5' ss Seq
AGGGTAACG
5' ss Score
6.18
Exon sequences
Seq C1 exon
GCAGCAGGGGGCGGCACCTCTCACATGGTGAGCTTCTCCTACTTCAATGCCTTCAACTCTCTGCTTAACAACATGGAAATGATCCGTAAAATCTACAGCACTCTCGCTGGAAGTCGGAAGGACACGCTTGTCACTAAAG
Seq A exon
AGGAGTTTGTTCATGCTGCAAACAAGTTTGGCCAAATTACCCCAATGGAAATCGACATCTTGTTCCAGCTATCAGGACTGCACTCCCAAACAGG
Seq C2 exon
ACGATTGAACATGACTGATATCGAGAGGATAGCTCCACTAGAGGAAGGATCCCTGCCATATAATGTAGCTGAGGCGCAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102362-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGCCTTCAACTCTCTGCT
R:
TCTCTGCGCCTCAGCTACATT
Band lengths:
178-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]