MmuEX6102098 @ mm10
Exon Skipping
Gene
ENSMUSG00000027010 | Slc25a12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:MGI Symbol;Acc:MGI:1926080]
Coordinates
chr2:71308056-71312563:-
Coord C1 exon
chr2:71312425-71312563
Coord A exon
chr2:71311463-71311556
Coord C2 exon
chr2:71308056-71308140
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTTTGTCTTCCAGAGG
3' ss Score
10.19
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GCTGCCGGAGGGGGTACCTCACACCAAGTTAGCTTCTCCTACTTCAACGCATTTAACTCCTTACTCAACAACATGGAGCTTGTTCGAAAGATCTATAGCACTTTAGCAGGCACGAGGAAAGATATTGAAGTCACCAAGG
Seq A exon
AGGAATTTGCCCAGAGCGCCATACGCTATGGACAGGTCACTCCACTAGAAATTGATATCTTGTACCAGCTTGCAGACCTATATAATGCCTCAGG
Seq C2 exon
GCGCTTGACTCTGGCAGACATCGAGAGAATAGCTCCGCTGGCCGAGGGGGCCTTACCTTACAACCTGGCAGAGCTTCAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027010-'31-19,'31-17,32-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCTCCTACTTCAACGCA
R:
GCCAGGTTGTAAGGTAAGGCC
Band lengths:
178-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types