GgaEX1053023 @ galGal3
Exon Skipping
Gene
ENSGALG00000009545 | F1P3D8_CHICK
Description
NA
Coordinates
chr7:19359300-19361536:+
Coord C1 exon
chr7:19359300-19359438
Coord A exon
chr7:19360740-19360833
Coord C2 exon
chr7:19361452-19361536
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCCTTTTAAATCCAGAGG
3' ss Score
6.25
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
Exon sequences
Seq C1 exon
GTAGCTGGTGGAACTGTTTCACATCAGGTCAGCTTCTCCTACTTCAATGCATTTAATGCCCTTTTGAATAACATGGATCTTGTTAGGAAGATATATAGTAATATAGCAGGTACAAGAAAAGATGTTGAAGTCACAAAAG
Seq A exon
AGGAATTTACACAGTCTGCAATCCGATTTGGACAAGTTACACCGTTGGAAATAGATATTCTTTACCAACTTACAGGTTTATACAGTGTTACTGG
Seq C2 exon
GCGCTTAACTTTGGCAGATATTGAGAGAGTAGCACCTTTAGCTGAGGGTGCATTACCGTACAACTTGGCAGAACTCCAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATCAGGTCAGCTTCTCCT
R:
GTACGGTAATGCACCCTCAGC
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]