RnoEX0081778 @ rn6
Exon Skipping
Gene
ENSRNOG00000009957 | Slc25a13
Description
solute carrier family 25 member 13 [Source:RGD Symbol;Acc:1565889]
Coordinates
chr4:31650557-31651720:-
Coord C1 exon
chr4:31651582-31651720
Coord A exon
chr4:31650848-31650941
Coord C2 exon
chr4:31650557-31650641
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTCTTCCATACAGAGG
3' ss Score
9.58
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCGCTGGAGGCACGAGATCTCATCAAGTCAGTTTCTCCTATTTTAATGGATTTAATTCGCTCCTTAACAACATGGAGCTCATTAGGAAGATCTACAGCACCCTGGCTGGCAGCAGGAAAGATGTGGAGGTGACTAAGG
Seq A exon
AGGAGTTTGCTCTGGCAGCCCAGAAGTTTGGTCAGGTTACACCCATGGAAGTTGACATCTTGTTTCAGTTAGCGGATTTATATGAGCCGAGGGG
Seq C2 exon
GCGCATGACCTTAGCAGACATTGAGCGGATTGCCCCTCTAGAGGAAGGAATGTTGCCCTTCAACTTGGCTGAGGCCCAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009957-'20-13,'20-12,21-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGCACGAGATCTCATCA
R:
GCAATCCGCTCAATGTCTGCT
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]