GgaEX6019044 @ galGal3
Exon Skipping
Gene
ENSGALG00000009728 | F1NWI3_CHICK
Description
NA
Coordinates
chr2:24128654-24129972:-
Coord C1 exon
chr2:24129834-24129972
Coord A exon
chr2:24128915-24129008
Coord C2 exon
chr2:24128654-24128738
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTATTTCTGTTCTCTTGCAGAGG
3' ss Score
11.06
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTGCTGGTGGTACCACTTCTCATCAGGTCAGCTTTTCCTATTTTAATGGATTTAATTCTCTCCTTAACAACATGGAGCTCATTAGAAAGATCTACAGTACTCTGGCTGGAAATAGAAAAGATGTGGAAGTCACTAAGG
Seq A exon
AGGAGTTCGTTCTGGCAGCTCAGAAATTTGGTCAGGTTACACCCATGGAAGTAGACATCTTGTTTCAGTTAGCAGATTTATATGAGCCACGGGG
Seq C2 exon
GCGTATGACATTAGCTGACATTGAAAGAATTGCTCCTCTGGAGGAAGGAACGTTGCCCTACAACCTGGCTGAGGCTCAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009728-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTTCTCATCAGGTCAGCT
R:
GCAACGTTCCTTCCTCCAGAG
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]