MmuEX6002869 @ mm10
Exon Skipping
Gene
ENSMUSG00000015112 | Slc25a13
Description
solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 [Source:MGI Symbol;Acc:MGI:1354721]
Coordinates
chr6:6113938-6115108:-
Coord C1 exon
chr6:6114970-6115108
Coord A exon
chr6:6114225-6114318
Coord C2 exon
chr6:6113938-6114022
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTTTTCCATACAGAGG
3' ss Score
9.71
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTGCTGGAGGCACTAGGTCCCATCAAGTTAGCTTCTCCTATTTTAATGGATTTAATTCGCTCCTTAACAACATGGAACTCATTAGGAAGATCTACAGTACTCTGGCTGGCAACAGGAAAGACGTGGAGGTGACTAAGG
Seq A exon
AGGAGTTCGCTTTGGCAGCCCAGAAGTTTGGTCAGGTTACACCCATGGAAGTTGACATCTTGTTTCAGTTAGCAGATTTATATGAGCCGAGGGG
Seq C2 exon
GCGCATGACCTTAGCAGACATTGAGCGGATCGCCCCTCTAGAGGAAGGAATGTTACCCTTCAACTTGGCCGAGGCCCAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015112-'31-26,'31-25,32-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGCACTAGGTCCCATC
R:
CGATCCGCTCAATGTCTGCTA
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types