GgaEX1053023 @ galGal4
Exon Skipping
Gene
ENSGALG00000009545 | SLC25A12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr7:17434204-17440323:+
Coord C1 exon
chr7:17434204-17434342
Coord A exon
chr7:17435645-17435738
Coord C2 exon
chr7:17440165-17440323
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCCTTTTAAATCCAGAGG
3' ss Score
6.25
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
Exon sequences
Seq C1 exon
GTAGCTGGTGGAACTGTTTCACATCAGGTCAGCTTCTCCTACTTCAATGCATTTAATGCCCTTTTGAATAACATGGATCTTGTTAGGAAGATATATAGTAATATAGCAGGTACAAGAAAAGATGTTGAAGTCACAAAAG
Seq A exon
AGGAATTTACACAGTCTGCAATCCGATTTGGACAAGTTACACCGTTGGAAATAGATATTCTTTACCAACTTACAGGTTTATACAGTGTTACTGG
Seq C2 exon
CTGTTGGTGCTACGGCAGTATATCCCATAGACCTGGTGAAAACTCGTATGCAGAATCAGCGCTCCACTGGTTCAGTCGTAGGAGAGTTGATGTATAAAAACAGCTTCGACTGCTTTAAAAAGGTTTTGCGTTTTGAAGGCTTTTTTGGTCTTTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545_MULTIEX1-6/12=5-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0015322=Mito_carr=FE(53.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATCAGGTCAGCTTCTCCT
R:
GCGCTGATTCTGCATACGAGT
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]