DreEX6020296 @ danRer10
Exon Skipping
Gene
ENSDARG00000062978 | ccdc151
Description
coiled-coil domain containing 151 [Source:ZFIN;Acc:ZDB-GENE-061013-787]
Coordinates
chr6:8028376-8029212:-
Coord C1 exon
chr6:8029031-8029212
Coord A exon
chr6:8028536-8028648
Coord C2 exon
chr6:8028376-8028453
Length
113 bp
Sequences
Splice sites
3' ss Seq
ATTGCTATTCTGTCCACTAGAGG
3' ss Score
5.42
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
TTGCTTGGCAACCAGTTAAAGACGCACAGGATACGGTTGTTGCTCGGCTGTAGAGGAGACGAAAATTCAACTTTAAACCTCAACATATTCATATATAATGCCCGGCACGTCGGTCTCTGGTGGCCTTATGGTCCCTATTCATGATAAAATTTCGGAGCTCCAAAGAAAAATCCAACTTCTTG
Seq A exon
AGGGAGACAGAAGCGCGTATTTCGAAAGCTCTCAGTCTGCCATTAAGAAGAACAGAGAGAGCATCCTACAGCTGAGACAAGAAAACAAAAACCTGCACAAGAAACTGGCTGAG
Seq C2 exon
AGCGATGAACAAGTTATCAAGGATGTTTTTCAAGGCTATGGTGTGGAGAAAGCACCATTCAGGAACATGCCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062978-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.605 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAACCAGTTAAAGACGCA
R:
GGCATGTTCCTGAATGGTGCT
Band lengths:
248-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]