MmuEX6064519 @ mm9
Exon Skipping
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21802330-21807078:-
Coord C1 exon
chr9:21806690-21807078
Coord A exon
chr9:21802489-21802610
Coord C2 exon
chr9:21802330-21802407
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTGACCTCTGTCTGCCGCAGAGG
3' ss Score
9.43
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACTTAGCAACCGGGAGATGCTAAGAGGCCCGCAGCCAGGCAGTTAGCAGAAGTGCATTCCCAGAGCCTAGGGAACCAGCGTTTAGGATCCTGGATTATAGAGGCCAACTTGTAGTTATTCTCCTACCCCTTAGAGGCTTCCCGACCTTAACCCGATCACCATGACGTCCCCCCTGTGCTGGGCAGCCGCGACCACCACGGTGACTAGCCCGGAGCAAGCTCCAGCGCCCTCTTCCAAAGCCAAAGGCAGTAAGGTTCACCGAAGCAAGTCTATGGGCCGGGCACAGGCCTGGCCTGCACATCATCCCAAGTCAGCAACCTCCTTCCATGCAATGAAGTCTTCTGTGCACGCACAGGTGCTTGAGTTACAAAGAAAAATCCAACTGTTAG
Seq A exon
AGGGTGACCGGAAGGCCTTTTATGAGAGCTCCCAATGGAACATGAAGAAGAACCAAGACACCATCAACCAGCTTCAGGAGGAGACCAAGGCTCTCCACGTGCAGCTCAAAGACCTGCTGCAG
Seq C2 exon
GGAGACTCGAAAGTGATTCAAGCAATCATTCAGGAATGGAAGTCAGAGAAACCGTTCTTGAAGAACAGGACTTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=0.293 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
PF079166=TraG_N=PU(20.5=82.9)
C2:
PF079166=TraG_N=FE(15.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTAGCCCGGAGCAAGCTC
R:
ACGGTTTCTCTGACTTCCATTCC
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: