MmuEX0009627 @ mm9
Exon Skipping
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21799652-21802610:-
Coord C1 exon
chr9:21802489-21802610
Coord A exon
chr9:21802330-21802407
Coord C2 exon
chr9:21799652-21799822
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGGGCTTCTCTCCTTGGCAGGGA
3' ss Score
8.43
5' ss Seq
GAGGTTAGC
5' ss Score
3.77
Exon sequences
Seq C1 exon
AGGGTGACCGGAAGGCCTTTTATGAGAGCTCCCAATGGAACATGAAGAAGAACCAAGACACCATCAACCAGCTTCAGGAGGAGACCAAGGCTCTCCACGTGCAGCTCAAAGACCTGCTGCAG
Seq A exon
GGAGACTCGAAAGTGATTCAAGCAATCATTCAGGAATGGAAGTCAGAGAAACCGTTCTTGAAGAACAGGACTTGTGAG
Seq C2 exon
CAGGCCCTGGAGCACCTGGAGCACCAGTTGAGGGAGAAGATGAACCAGCTGAATGCCTTGCGACACCAGGTAATACTGCGGCAGAAACGGCTGGAGGACCTGAGGCTGCAGCACAGCCTGCGCCAGCTGGAGATGGCAGAGGTCCAAGACAGCAACATGGAGGCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.293 A=0.077 C2=0.281
Domain overlap (PFAM):
C1:
PF079166=TraG_N=PU(20.5=82.9)
A:
PF079166=TraG_N=FE(15.1=100)
C2:
PF079166=TraG_N=FE(33.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCACGTGCAGCTCAAAG
R:
TGTCTTGGACCTCTGCCATCT
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types