HsaEX0013104 @ hg38
Exon Skipping
Gene
ENSG00000198003 | CCDC151
Description
coiled-coil domain containing 151 [Source:HGNC Symbol;Acc:HGNC:28303]
Coordinates
chr19:11426873-11431020:-
Coord C1 exon
chr19:11430899-11431020
Coord A exon
chr19:11430699-11430776
Coord C2 exon
chr19:11426873-11427040
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTGGACTTCCCTCCTTGCAGGGA
3' ss Score
9.54
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
AGGGTGACCGGAAGGCTTTTTTTGAGAGCTCTCAGTGGAACATCAAGAAGAACCAGGAGACCATCAGTCAGCTCCGCAAGGAGACTAAGGCACTGGAACTAAAGCTGCTGGACCTGCTCAAG
Seq A exon
GGAGATGAGAAAGTGGTCCAGGCAGTGATTCGCGAATGGAAGTGGGAGAAGCCATACCTGAAGAACAGGACAGGACAG
Seq C2 exon
GCCCTGGAGCACCTAGACCACCGGCTGAGGGAGAAGGTGAAGCAGCAGAACGCCCTGCGGCACCAGGTGGTGTTGCGGCAGAGGCGGCTGGAGGAGCTCCAGCTGCAGCACAGCCTGCGCCTTCTGGAGATGGCGGAGGCGCAAAACAGACACACGGAGGTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198003_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.038 C2=0.320
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAAGCTGCTGGACCTGCTC
R:
TGTGTCTGTTTTGCGCCTCC
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development