BtaEX6038220 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008201 | CCDC151
Description
Bos taurus coiled-coil domain containing 151 (CCDC151), mRNA. [Source:RefSeq mRNA;Acc:NM_001102047]
Coordinates
chr7:17029760-17032265:-
Coord C1 exon
chr7:17032144-17032265
Coord A exon
chr7:17031959-17032036
Coord C2 exon
chr7:17029760-17029930
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTGGGCTCTCCTCCTTGCAGGGA
3' ss Score
11.19
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
AGGGTGACCGGAAGGCCTTTTATGAGAGCACCCAGTGGAACATCAAGAAGAATCAGGAGACCATTAACCAGCTCCGCGAGGAGACCAGGGTACTGCAGCTACAGTTGACAGCCCTGCTCCAG
Seq A exon
GGAGATGAGAAAGTGGTCCAGGCAGTGATTCGAGAATGGAAGTCAGAGAAGCCGTACCTGAAGAACAGGACAGGCCAG
Seq C2 exon
CAAGCCCTGGAGCATCTGGACTACCGGCTGAACGAAAAGGTGAAGCAACTGAATGCTCTTCGGCACCAGCTGGGACTGCGGCAGAAGTGGCTGGAGGAGCTCCAGCTGCAGCACAGTTTGCGCGAGCTGGAGATAGCCGAGGCACAAGACAGCAACACCGAGGTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008201-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.038 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTACAGTTGACAGCCCTG
R:
CTGTCTTGTGCCTCGGCTATC
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]