MmuEX0009627 @ mm10
Exon Skipping
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21995208-22002634:-
Coord C1 exon
chr9:22002246-22002634
Coord A exon
chr9:21997886-21997963
Coord C2 exon
chr9:21995208-21995378
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGGGCTTCTCTCCTTGGCAGGGA
3' ss Score
8.43
5' ss Seq
GAGGTTAGC
5' ss Score
3.77
Exon sequences
Seq C1 exon
ACTTAGCAACCGGGAGATGCTAAGAGGCCCGCAGCCAGGCAGTTAGCAGAAGTGCATTCCCAGAGCCTAGGGAACCAGCGTTTAGGATCCTGGATTATAGAGGCCAACTTGTAGTTATTCTCCTACCCCTTAGAGGCTTCCCGACCTTAACCCGATCACCATGACGTCCCCCCTGTGCTGGGCAGCCGCGACCACCACGGTGACTAGCCCGGAGCAAGCTCCAGCGCCCTCTTCCAAAGCCAAAGGCAGTAAGGTTCACCGAAGCAAGTCTATGGGCCGGGCACAGGCCTGGCCTGCACATCATCCCAAGTCAGCAACCTCCTTCCATGCAATGAAGTCTTCTGTGCACGCACAGGTGCTTGAGTTACAAAGAAAAATCCAACTGTTAG
Seq A exon
GGAGACTCGAAAGTGATTCAAGCAATCATTCAGGAATGGAAGTCAGAGAAACCGTTCTTGAAGAACAGGACTTGTGAG
Seq C2 exon
CAGGCCCTGGAGCACCTGGAGCACCAGTTGAGGGAGAAGATGAACCAGCTGAATGCCTTGCGACACCAGGTAATACTGCGGCAGAAACGGCTGGAGGACCTGAGGCTGCAGCACAGCCTGCGCCAGCTGGAGATGGCAGAGGTCCAAGACAGCAACATGGAGGCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.623 A=0.077 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCAAGTCAGCAACCTCC
R:
GCCGCAGTATTACCTGGTGTC
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types