DreEX0019441 @ danRer10
Exon Skipping
Gene
ENSDARG00000062978 | ccdc151
Description
coiled-coil domain containing 151 [Source:ZFIN;Acc:ZDB-GENE-061013-787]
Coordinates
chr6:8026789-8028648:-
Coord C1 exon
chr6:8028536-8028648
Coord A exon
chr6:8028376-8028453
Coord C2 exon
chr6:8026789-8026968
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTTTATGTTGTCCAGAGC
3' ss Score
4.13
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
AGGGAGACAGAAGCGCGTATTTCGAAAGCTCTCAGTCTGCCATTAAGAAGAACAGAGAGAGCATCCTACAGCTGAGACAAGAAAACAAAAACCTGCACAAGAAACTGGCTGAG
Seq A exon
AGCGATGAACAAGTTATCAAGGATGTTTTTCAAGGCTATGGTGTGGAGAAAGCACCATTCAGGAACATGCCTGTGAAG
Seq C2 exon
GCAGCTCGTACAGTGCTGGAGAAGCAGGTGCGTGATAAAATGAAGAAGTTGAATGCTATGAAACACACCACTCAGAAACAGAGGCAGCGTTTAGAGGACCTGAAGCTGCAGTACCAGAGCATGAAGCCACACAACAAAAGCCCTCTGCCTGACACCCAGAAACAGGAGGACGAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062978_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.605 A=0.115 C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGCACAAGAAACTGGCT
R:
GGGCTTTTGTTGTGTGGCTTC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]