RnoEX0017693 @ rn6
Exon Skipping
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23006604-23010181:-
Coord C1 exon
chr8:23010060-23010181
Coord A exon
chr8:23009900-23009977
Coord C2 exon
chr8:23006604-23006774
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGGGCTCCTCTCCTTGGCAGGGA
3' ss Score
7.89
5' ss Seq
GAGGTTAGC
5' ss Score
3.77
Exon sequences
Seq C1 exon
AGGGTGATCGTAAGGCCTTTTATGAGAGCTCACAATGGAACATGAAGAAGAACCAAGACACCATCAACCACCTCCAGGAGGAGACCAAGTCTCTCCACATGCAGCTAAAAGACCTGCTGCAG
Seq A exon
GGAGACTCCAAAGTGGTGCAGGCAATCATTCAGGAATGGAGGTCAGAGAAGCCGTACCTGAAGAACAGGACATGTGAG
Seq C2 exon
CAGGCCCTGGAGCACCTGGAGCACCAGTTGAGGGAGAAGATGAACCAGCTGAATGCCTTACGACACCAGGTAATCCTTCGGCAGAAACGGCTGGAGGAACTGAGGCTGCAGCACAGCCTGCGGCAGCTGGAGATGGCAGAGATCCAAGACAGCAACACAGAGGCCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.077 C2=0.316
Domain overlap (PFAM):
C1:
PF079166=TraG_N=PU(21.4=87.8)
A:
PF079166=TraG_N=FE(14.9=100)
C2:
PF079166=TraG_N=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACCATCAACCACCTCCA
R:
CTCAGTTCCTCCAGCCGTTTC
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]