RnoINT0030552 @ rn6
Intron Retention
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23009900-23010181:-
Coord C1 exon
chr8:23010060-23010181
Coord A exon
chr8:23009978-23010059
Coord C2 exon
chr8:23009900-23009977
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGGGCTCCTCTCCTTGGCAGGGA
3' ss Score
7.89
Exon sequences
Seq C1 exon
AGGGTGATCGTAAGGCCTTTTATGAGAGCTCACAATGGAACATGAAGAAGAACCAAGACACCATCAACCACCTCCAGGAGGAGACCAAGTCTCTCCACATGCAGCTAAAAGACCTGCTGCAG
Seq A exon
GTGAGGGTGCACAGGTGAGTGGCAGGGTTTGGGGCGGCAAATGAGTGACCTGAGGAAGTGACTGGGCTCCTCTCCTTGGCAG
Seq C2 exon
GGAGACTCCAAAGTGGTGCAGGCAATCATTCAGGAATGGAGGTCAGAGAAGCCGTACCTGAAGAACAGGACATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263:ENSRNOT00000017820:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF079166=TraG_N=PU(21.4=87.8)
A:
NA
C2:
PF079166=TraG_N=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTGATCGTAAGGCCTTTT
R:
AGGTACGGCTTCTCTGACCTC
Band lengths:
181-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]