HsaINT0029238 @ hg19
Intron Retention
Gene
ENSG00000198003 | CCDC151
Description
coiled-coil domain containing 151 [Source:HGNC Symbol;Acc:28303]
Coordinates
chr19:11541519-11541840:-
Coord C1 exon
chr19:11541719-11541840
Coord A exon
chr19:11541597-11541718
Coord C2 exon
chr19:11541519-11541596
Length
122 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTGGACTTCCCTCCTTGCAGGGA
3' ss Score
9.54
Exon sequences
Seq C1 exon
AGGGTGACCGGAAGGCTTTTTTTGAGAGCTCTCAGTGGAACATCAAGAAGAACCAGGAGACCATCAGTCAGCTCCGCAAGGAGACTAAGGCACTGGAACTAAAGCTGCTGGACCTGCTCAAG
Seq A exon
GTAAGGAGCAAAGGGGTGGGTGTAGGGTTCCCGCGGCGGTGGATGGTGGGGGACAAGTAGGTAGCACCTGGCCTTAGCTGGAGGTGGCATGCTGAAAGGTGACTGGACTTCCCTCCTTGCAG
Seq C2 exon
GGAGATGAGAAAGTGGTCCAGGCAGTGATTCGCGAATGGAAGTGGGAGAAGCCATACCTGAAGAACAGGACAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198003-CCDC151:NM_145045:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCTCTCAGTGGAACATCA
R:
CTGTCCTGTCCTGTTCTTCAG
Band lengths:
177-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)