HsaINT0029238 @ hg38
Intron Retention
Gene
ENSG00000198003 | CCDC151
Description
coiled-coil domain containing 151 [Source:HGNC Symbol;Acc:HGNC:28303]
Coordinates
chr19:11430699-11431020:-
Coord C1 exon
chr19:11430899-11431020
Coord A exon
chr19:11430777-11430898
Coord C2 exon
chr19:11430699-11430776
Length
122 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTGGACTTCCCTCCTTGCAGGGA
3' ss Score
9.54
Exon sequences
Seq C1 exon
AGGGTGACCGGAAGGCTTTTTTTGAGAGCTCTCAGTGGAACATCAAGAAGAACCAGGAGACCATCAGTCAGCTCCGCAAGGAGACTAAGGCACTGGAACTAAAGCTGCTGGACCTGCTCAAG
Seq A exon
GTAAGGGGCAAAGGGGTGGGTGTAGGGTTCCCGTGGCGGTGGATGGTGGGGGACAAGTAGGTAGCACCTGGCCTTAGCTGGAGGTGGCATGCTGAAAGGTGACTGGACTTCCCTCCTTGCAG
Seq C2 exon
GGAGATGAGAAAGTGGTCCAGGCAGTGATTCGCGAATGGAAGTGGGAGAAGCCATACCTGAAGAACAGGACAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198003:ENST00000356392:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCTCTCAGTGGAACATCA
R:
CTGTCCTGTCCTGTTCTTCAG
Band lengths:
177-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development