MmuINT0030499 @ mm9
Intron Retention
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21802330-21802610:-
Coord C1 exon
chr9:21802489-21802610
Coord A exon
chr9:21802408-21802488
Coord C2 exon
chr9:21802330-21802407
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGGGCTTCTCTCCTTGGCAGGGA
3' ss Score
8.43
Exon sequences
Seq C1 exon
AGGGTGACCGGAAGGCCTTTTATGAGAGCTCCCAATGGAACATGAAGAAGAACCAAGACACCATCAACCAGCTTCAGGAGGAGACCAAGGCTCTCCACGTGCAGCTCAAAGACCTGCTGCAG
Seq A exon
GTGAGGTGCACAGGTGAATGGCAGGGTTTGGGGCAGCAAACAAGTGACCTGAGGAAGTGACTGGGCTTCTCTCCTTGGCAG
Seq C2 exon
GGAGACTCGAAAGTGATTCAAGCAATCATTCAGGAATGGAAGTCAGAGAAACCGTTCTTGAAGAACAGGACTTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632-Ccdc151:NM_029939:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF079166=TraG_N=PU(20.5=82.9)
A:
NA
C2:
PF079166=TraG_N=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTTTTATGAGAGCTCCCA
R:
AGAACGGTTTCTCTGACTTCCA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: