DreEX6020678 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10412806-10416259:-
Coord C1 exon
chr6:10416127-10416259
Coord A exon
chr6:10413042-10413169
Coord C2 exon
chr6:10412806-10412954
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTGTTGGTGCTTAGGTC
3' ss Score
9.59
5' ss Seq
AAGGTTCGG
5' ss Score
5.96
Exon sequences
Seq C1 exon
ATTTTGAAGACGCTTCATAAGACCTACTCTAACATGAAACTGAAACCTATCTGGACTGACATCAACCCTAAAGCTGTCACCACTGATGAGCTGTTTGGCTTTCTCCACCCAGCCACACGGGAGTGGAAAGATG
Seq A exon
GTCTATTTTCTTCCACTATGAGAGAGCTTTCTGGCATCTCTCATGATGGGCCGAAGTGGATTGTTCTAGATGGCGACATTGACCCCATGTGGATTGAATCCCTGAACACTGTCATGGATGATAATAAG
Seq C2 exon
GTGCTTACCTTGGCCAGTAACGAGCGGATATCACTGGCCCCTTCCATGCGCTTGCTGTTTGAGATAAGCCATTTGAAAGCTGCAACACCGGCCACTGTATCAAGGGCTGGAATTCTCTATGTGAACCCTCAGGATCTGGGCTGGAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.1=100)
A:
PF077289=AAA_5=FE(30.7=100)
C2:
PF077289=AAA_5=PD(25.5=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAACCTATCTGGACTGACA
R:
GAACTCCAGCCCAGATCCTGA
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]