MmuEX6083430 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119274863-119279568:-
Coord C1 exon
chr12:119279436-119279568
Coord A exon
chr12:119277137-119277264
Coord C2 exon
chr12:119274863-119275011
Length
128 bp
Sequences
Splice sites
3' ss Seq
CATCTGCTCCCGTTTTACAGGTC
3' ss Score
11.61
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
ATTTTGAGAACACTGAACAGAACATATGTTAACATGAAACAGAAGCCTGTTTGGAGTGACTTAAACCCCAAGGCTGTGACAACAGATGAACTCTTTGGTTTCATACATCATGCTACCCGAGAATGGAAAGATG
Seq A exon
GTCTCTTCTCATCCATTCTGAGAGAGCAGGCAAATCTCACACATGATGGGCCAACCTGGATAGTCCTGGATGGGGATATTGACCCCCTGTGGATCGAGTCCCTGAACACAGTGATGGATGATAACAAG
Seq C2 exon
GTGCTGACCCTGGCCAGCAATGAACGAGTGGCCCTCAAACCTTCCATGAGGCTTCTATTCGAGACCCATCACCTGCGGACAGCCACACCAGCCACGGTCTCCAGAGCTGGCATTTTGTATGTGAACCCGCAGGATCTGGGCTGGAATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.1=100)
A:
PF077289=AAA_5=FE(30.7=100)
C2:
PF077289=AAA_5=PD(25.5=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCCTGTTTGGAGTGACT
R:
GATTCCAGCCCAGATCCTGC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: