Special

DreEX6040392 @ danRer10

Exon Skipping

Gene
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19493697-19494420:-
Coord C1 exon
chr16:19494288-19494420
Coord A exon
chr16:19494035-19494162
Coord C2 exon
chr16:19493697-19493845
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGAATCTCTTTGTTTGACAGGTT
3' ss Score
9.93
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
ATCCTAAAAACTCTTCACAAAACTTACTTCAACATGGGAAGGAAGCCTTTCTGGAATGATCTGAACCCCAAATCAATGAGCAATGATGAACTGTTTGGATTCTTTCATCCTGCCACTCGGGAATGGAAAGATG
Seq A exon
GTTTATTGTCACATTTCATGCGGGATCAAGCCAGTAACTCTCACTCAGGGCCCAAGTGGATTGTTCTGGATGGAGACATTGACCCCATGTGGATTGAGTCTCTTAACACCGTCATGGATGACAACAAG
Seq C2 exon
GTTCTTACTTTGGCTAATAATGAACGGATTCCTCTCACTCCCTCGATGAGACTACTGTTTGAGATCAGCCATCTGAGACATGCCACTCCTGCCACCGTGTCACGAGCTGGCATATTGTACATCAATCCTCAAGAGCTTAGCTGGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF077289=AAA_5=FE(32.1=100)
A:
PF077289=AAA_5=FE(30.7=100)
C2:
PF077289=AAA_5=PD(25.5=70.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAGGAAGCCTTTCTGGA
R:
AGGCTCCAGCTAAGCTCTTGA
Band lengths:
248-376
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]