RnoEX6030081 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145943540-145947179:-
Coord C1 exon
chr6:145947047-145947179
Coord A exon
chr6:145944915-145945042
Coord C2 exon
chr6:145943540-145943688
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCTCCCACTTTGCAGGTC
3' ss Score
11.45
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
ATTTTGAGAACACTGAACAGAACATATGTTAACATGAAACAGAAGCCTGTTTGGAATGACTTAAACCCCAAGGCTGTGACAACGGATGAACTCTTTGGTTTCATTCATCATGCTACCCGAGAATGGAAAGATG
Seq A exon
GTCTCCTCTCGTCCATTCTGAGAGAGCAGGCAAATCTCACACATGATGGGCCAACCTGGATAGTCCTGGATGGTGATATTGACCCACTGTGGATCGAGTCCTTGAACACGGTCATGGATGATAACAAG
Seq C2 exon
GTGCTGACCCTCGCCAGCAATGAACGAGTGGCCCTCACACCCTCCATGAGGCTTCTGTTTGAGACCCACCACCTACAGACAGCCACACCAGCCACGGTCTCCAGAGCTGGCATTTTGTATGTGAACCCGCAGGACCTGGGCTGGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'55-56,'55-55,56-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.1=100)
A:
PF077289=AAA_5=FE(30.7=100)
C2:
PF077289=AAA_5=PD(25.5=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAACATGAAACAGAAGCCTG
R:
GTCCTGCGGGTTCACATACAA
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]