DreEX6020692 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10387157-10389883:-
Coord C1 exon
chr6:10389650-10389883
Coord A exon
chr6:10389258-10389404
Coord C2 exon
chr6:10387157-10387270
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATTATGTATCTCTATTTTAGGTG
3' ss Score
11.39
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCGGATGTGAGAGTGTCTATTAGTGAGTTTATCTCATTCGCTCACACTTGTGTGAATGAAGTCAGTGTAAAGTATCAGCAGAATGAAAAGCGCTTCAATTACACCACACCCAAGAGCTTCTTGGAGTTCATGAAACTTTACGGCAACCTGCTGGGCTCAAAGAGAACAGAACTGAGACAAAAGACAGAACGCCTGGAGAATGGCCTGCAGAAGCTGCTGACCACGGCATCACAG
Seq A exon
GTGGAGGATCTGAAGGCTAAACTGGCCATACAGGAAGTGGAGCTGCATCTAAGAAACACTGATACTGAAGCTCTCATTGCTAAAATTGGCCAGCAGAGTGAGAAACTCAGTCAGGAGAGGAGCGTTGCAGATGCAGAGGAGAAAAAG
Seq C2 exon
GTGGAAGCGATCCAAGCAGAAGTGACCAAACAGCAGCAGGAGACGGAAGCTGACCTGGAGAAAGCCGAGCCAGCTCTACAGGCAGCAAATGCAGCCCTCAACACACTCAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'52-54,'52-53,53-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.143 C2=0.553
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
A:
PF127772=MT=FE(13.9=100)
C2:
PF127772=MT=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCACACCCAAGAGCTTCT
R:
GAGTGTGTTGAGGGCTGCATT
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]