BtaEX6026605 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30657722-30670626:+
Coord C1 exon
chr4:30657722-30657955
Coord A exon
chr4:30661824-30661970
Coord C2 exon
chr4:30670513-30670626
Length
147 bp
Sequences
Splice sites
3' ss Seq
GAGTCATGATTTTCCTTTAGGTG
3' ss Score
7.27
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
CCCCAGGATAAAGACTCTATTAGCCTTTTCATGGCCCACGTTCACACTAGTGTACATGAAATGAGTACCAGGTATTACCAGAATGAGAGAAGACACAACTATACGACCCCAAAGAGTTTTCTGGAACAGATATCACTGTTTAAGAACCTGTTGAAAAAGAAACAAGAAGCGGTGTCCCAGAAGAAAGAGCACTTGGTGAATGGTGTCCAGAAGCTGAGAACCACAGCCTCTCAG
Seq A exon
GTGGGAGAGCTGAAAGCCAGACTTGCCTCTCAAGAAGCTGAGTTACAACTGAGAAATCAGGATGCTGAAGCTCTGATCGCAAAGATGGGGCTTCAGACAGAGAAACTGAGCCGGGAAAAGGCCATCGCCGACGCCGAGGAGCGAAAG
Seq C2 exon
GTGACAGCCATTCAGACTGAAGTGTCCCAGAAACAGAGGGAGTGTGAGGCAGACTTACTGAAAGCTGAGCCCGCGCTGGTGGCTGCGACAGCTGCCCTCAATACACTCAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'69-72,'69-71,70-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.092 C2=0.158
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
A:
PF127772=MT=FE(13.9=100)
C2:
PF127772=MT=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCCCACGTTCACACTAG
R:
TGCCTCACACTCCCTCTGTTT
Band lengths:
256-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]