DreEX6040408 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19437518-19441283:-
Coord C1 exon
chr16:19441050-19441283
Coord A exon
chr16:19437722-19437868
Coord C2 exon
chr16:19437518-19437631
Length
147 bp
Sequences
Splice sites
3' ss Seq
CATGATATTTTTGTGATGAGGTG
3' ss Score
-3.53
5' ss Seq
AAGGTGGAG
5' ss Score
1.51
Exon sequences
Seq C1 exon
CCGACCATTTGGGAATCCATCAGTCTTTTCATGGCCCACGCGCACACCAGCGTCAAGCGGGTTAGCGAGCGTTACTGCTGCAACGAGAAGAGGCACAACTACAGCACATCTAAGAGCTTCCTGGAGCAGCTGAGGCTTTACAAGAGTCTACTGGAAAACAGGGAGAAGGAACTGCATCAGAGACTTGACAGGCTTCAGTCTGGCCTTCAGAAAATCAAGAGTACTGCTTCTCAG
Seq A exon
GTGGAGGATCTGACAGTAAAGCTGAACTCTCAGGAAGTGGAGCTGACAATGAAGAACCAGGCAGCTGAGGCTCTTATGGCCAGAATTGGCCTGCAGACAGAGAGAGTGAGCCAGAAGAGAGAAGACGCAGACCTGGAGGAGCAGAAG
Seq C2 exon
GTGGCTGCTATGCAAGCAGAGGTGTCCCGAAGACTAAAAGAATGTGAAAAGGATTTGGCTAAAGCTGAACCTGCTTTAGATGCAGCTACAGCTGCTCTCCAAACACTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.265 C2=0.026
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
A:
PF127772=MT=FE(13.9=100)
C2:
PF127772=MT=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCTTTTCATGGCCCACG
R:
TAGTCTTCGGGACACCTCTGC
Band lengths:
251-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]