RnoEX6030093 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145878234-145888529:-
Coord C1 exon
chr6:145888296-145888529
Coord A exon
chr6:145882637-145882783
Coord C2 exon
chr6:145878234-145878347
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTGACGACTTTTCCTTTCAGGTG
3' ss Score
10.26
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
CCACAGCACAAAGATTCTATCAGCCTTTTCATGGCGTATGTTCACACCAGTGTAAAGGAAGTAAGTGCCTGGTACTACCAGAACGAGAGGAGGTACAACTACACCACCCCAAGGAGTTTCTTAGAACAAATATCACTGTTTAAGAGCCTGCTGAAGAAGAAGCGAGGAGAGGTGCAGCGGAAGAAGGAGCACCTGGGGAATGGAATCCAGAAGCTGCAGACCACGGCCTCACAG
Seq A exon
GTGGGAAATCTGAAGGCCAGGCTGGCCTCTCAAGAAGCTGAGCTGCAGCTCAGAAACCAGGACGCCGAGGCCCTGATCACAAAGATCGGGCTTCAGACGGAGAAAGTGAGCCGGGAAAAGGCCATCGCAGATGCAGAGGAGCGAAAG
Seq C2 exon
GTGGCCGCCATTCAAACTGAAGCGTCCCAGAAGCAGAGGGAGTGCGAGGCTGACTTACTCAAGGCTGAGCCCGCCCTGGTCGCTGCTACAGCTGCACTCAATACACTCAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'73-73,'73-72,74-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.158
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
A:
PF127772=MT=FE(13.9=100)
C2:
PF127772=MT=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTATGTTCACACCAGTGT
R:
ACTCCCTCTGCTTCTGGGAC
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]