DreEX6020696 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10374546-10376601:-
Coord C1 exon
chr6:10376366-10376601
Coord A exon
chr6:10374877-10374999
Coord C2 exon
chr6:10374546-10374750
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGGTCATTGTGCAGGTA
3' ss Score
8.12
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GTGCCTATTCCTATGTCGGAGGGCTCAGATCCCATCTCCATGTTAACAGATGATGCTACTATTGCTAAGTGGAATAACGAGGGTTTGCCGGGTGATAAGATGTCCACTCAGAACGCCACTATACTGACCAACTGCGAGCGCTGGCCTCTGCTCATTGACCCCCAGCTGCAGGGCATTAAATGGCTCAAGAGTCGCTACGGCAATAGCCTGAAAGTCATTAACCTCAGTCAGAAGGG
Seq A exon
GTATGTGGATGTGATTGAGCAGGCTGTGGTCTCAGGAGAGCCTGTATTGATTGAGAATCTGGAGGAGACAATTGAACCAGTTATTGATCCGCTGCTGGGCCGACACACCATAAAGAAGGGCAG
Seq C2 exon
ATGCATTAAAGTGGGGGATAAGGAGTGTTATTTCCATCCGGACTTTCGGCTGATTCTCCACACAAAGCTGGCAAACCCACACTATAAACCTGAGATCCAGGCTCAGACCACCCTCATCAACTTTACTGTTACACGGGACGGGCTGGAGGACCAGCTGTTGGCTGAGGTGGTCAACTTAGAGAGACCAGACCTCGAATATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'61-64,'61-63,62-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(28.5=82.3)
A:
PF127812=AAA_9=FE(18.0=100)
C2:
PF127812=AAA_9=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCACTCAGAACGCCACTA
R:
GTGGTCTGAGCCTGGATCTCA
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]