MmuEX6083449 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:117933738-117954946:-
Coord C1 exon
chr12:117954711-117954946
Coord A exon
chr12:117952490-117952612
Coord C2 exon
chr12:117933738-117933886
Length
123 bp
Sequences
Splice sites
3' ss Seq
GATTCTGACTACACTTTCAGGTT
3' ss Score
6.8
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
GTTTCCATCCCAATAGCAGAAGGGCTGGACTTGATTGCCATGTTGACAGACGATGCTACAATTGCCACCTGGAATAACGAAGGGCTACCCAGCGACAGGATGTCAACTGAAAATGCCACCATTCTAACTCACTGCGAGCGCTGGCCCCTGATGATCGATCCCCAGCAACAGGGAATTAAGTGGATCAAGAATAAGTATGGGCCTGACCTGAAAGTCACACACTTAGGCCAGAAAGG
Seq A exon
GTTTTTAAACACCATTGAGACAGCCCTGGCCTTCGGTGATGTCATCCTAATTGAAAACCTCAAGGAGACAGTGGATCCAGTCCTGGGTCCTCTGCTCGGCAGGAACACCACTAAGAAAGGAAA
Seq C2 exon
GTTCATCAGGATTGGCGATAAAGAATGCGAATTCAACAAGAACTTCCGCCTCATCCTACACACAAAACTGGCAAACCCACACTACAAGCCGGAACTACAAGCCCAAACCACCCTTCTCAATTTCACAGTCACAGAAGATGGTCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'86-78,'86-77,87-78
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(28.5=82.3)
A:
PF127812=AAA_9=FE(18.0=100)
C2:
PF127812=AAA_9=FE(30.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATGCTACAATTGCCACCT
R:
TGTGTAGGATGAGGCGGAAGT
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types