DreEX6040416 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19406604-19413716:-
Coord C1 exon
chr16:19413481-19413716
Coord A exon
chr16:19408744-19408866
Coord C2 exon
chr16:19406604-19406808
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTGACGTTTTACAGGTA
3' ss Score
9.03
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
ACCCCTGTCCCGCTGACAGACGGTCTGGACCCTGTACTTATGCTGACTGACCAGGCCACTGTGGCAGGCTGGCAGAACCAGGGCCTGCCAGCTGATCGGCTGTCCATTGAAAACGCAGCCATCCTAAAGTCCAGCCAGCGATGGCCTCTGATCGTGGATCCTCAGCAACAGGCCAGCAAGTGGATCCGAAACCTGTACGGGCCCAGCCTGAGAGTGCTGCAGTATGGTCAGAAAGG
Seq A exon
GTATCTAGATGTAATTGAGCAGGCTTTGGCCTGTGGTGAGGTGGTCTTGATTGAAAACATGAAGGAGCGAGTGGACCCTCTCCTGGAACCACTGCTAGGAAGACAAACCTTAAAAAAAGGAAG
Seq C2 exon
GTACATCAGACTGGGTGATAAGGAGTGCGAGTATGACAAAGGTTTTCGTCTTCTTCTACACACTAAGCAAGCAAACCCTCACTTCCCGCCGGAGCTGCAGGCCCAGACCACACTGATCAACTTCACTGTGACACGCTCCGGTCTGGAGGATCAGCTCCTGGGGCAAGTGGTCACACAAGAAAGGCCTGAGCTGGAAATGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'40-43,'40-42,41-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(28.5=82.3)
A:
PF127812=AAA_9=FE(18.0=100)
C2:
PF127812=AAA_9=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTGGATCCGAAACCTGT
R:
TTCTTGTGTGACCACTTGCCC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]