RnoEX6030095 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145833659-145853123:-
Coord C1 exon
chr6:145852888-145853123
Coord A exon
chr6:145851096-145851218
Coord C2 exon
chr6:145833659-145833863
Length
123 bp
Sequences
Splice sites
3' ss Seq
CATTCTGACCACACTTTCAGGTT
3' ss Score
7.91
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
GTTTCCATCCCAATAGCGGAAGGCCTGGACATGATTGCCACGTTGACAGACGATGCTACAATTGCCACCTGGAATAACCAAGGGCTACCCAGCGACAGGATGTCAACTGAAAATGCCACCATTCTAACTCACTGCAAGCGCTGGCCCCTGATGATCGATCCCCAGCAACAGGGAATTAAATGGATCAAGAATAAATACGGGCCTGACCTGAAAGTCACACACTTAGGCCAGAAAGG
Seq A exon
GTTTTTAAATGCCATTGAGATGGCCCTGGCCTTTGGTGATGTCATCCTAATTGAGAACCTCAAGGAGACAGTGGATCCAGTCCTGGGTCCTCTGCTTGGCAGGAACACCATTAAGAAAGGAAA
Seq C2 exon
GTACATCAGGATTGGTGATAAAGAATGTGAATTCAACAAGAACTTCCGCCTCATCCTACACACGAAACTGGCAAACCCACACTACAAGCCAGAACTACAAGCCCAGACGACCCTCCTCAATTTCACAGTCACAGAAGATGGTCTTGAAGGCCAGCTGCTGGCAGAGGTAGTCAGTGTCGAAAGGCCAGATTTGGAGAGGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'82-84,'82-81,84-84=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(28.5=82.3)
A:
PF127812=AAA_9=FE(18.0=100)
C2:
PF127812=AAA_9=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGACAGGATGTCAACTGA
R:
GTCTGGGCTTGTAGTTCTGGC
Band lengths:
255-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]