GgaEX1020253 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1119865-1124023:+
Coord C1 exon
chr18:1119865-1120100
Coord A exon
chr18:1121586-1121708
Coord C2 exon
chr18:1123819-1124023
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGCTAATGCTGTCTCCACAGGTA
3' ss Score
10.07
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGCCGATCCCTGTAACTCCATCCCTAGACCCTCTGACCATGCTGACGGATGATGCTGATATTGCAGCTTGGCAGAATGAGGGGCTGCCAGCCGATCGGATGTCCACTGAAAATGCCACCATTCTGACCAACTGCGAGCGTTGGCCCCTCCTGGTGGATCCCCAGCTGCAGGGAATCAAATGGATCAAAGCAAAGTATGGCGAAGACCTGCGGGTGATCCGAATTGGGCAGAAGGG
Seq A exon
GTATCTGGATACAATGGAACAAGCCCTGGCTGCAGGAGAACTGGTTCTGATTGAAAACCTGGAGGAGTCCGTGGATCCAGTTCTGGGGCCATTACTGGGGAGAGAAACAATCAAGAAAGGAAG
Seq C2 exon
GTACATTAAGATCGGGGACAAGGAGTGTGAGTTCAGCCCTGCCTTCCGCCTGATCCTGCACACAAAGCTGGCAAACCCTCACTTCCAGCCCGAGCTGCAGGCACAGTGCACCCTCATAAACTTCACCGTCACGCGGGACGGCCTCGAGGAGCAGCTGCTGGCGGCGGTGGTCAATGCGGAACGGCCCGACCTGGAGCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'60-60,'60-59,61-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(28.5=82.3)
A:
PF127812=AAA_9=FE(18.0=100)
C2:
PF127812=AAA_9=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGACCATGCTGACGGATG
R:
AGGGCTGAACTCACACTCCTT
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]