BtaEX0011633 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31188449-31193320:+
Coord C1 exon
chr19:31188449-31188684
Coord A exon
chr19:31191214-31191336
Coord C2 exon
chr19:31193116-31193320
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGCCCAACTCTCTCCTCAGCTA
3' ss Score
7.94
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTTCCAATCCCGGTGACCCCCACCCTGGACCCCCTACGGATGCTGATGGATGATGCCGACGTGGCCACCTGGCAGAATGAGGGCCTCCCTGCAGACCGCATGTCCACGGAGAATGCCGCCATCCTCCTCAGCTGCGAGCGCTGGCCACTCATGGTGGACCCTCAGCTACAAGGCATCAAATGGATCAAGAACAAGTATGGTGAGGACCTCCGGGTCACCCAGATCGGCCAGAAGGG
Seq A exon
CTACCTTCAGACAGTAGAGCGTGCTGTGGAAGCCGGGGACATGGTGCTGATTGAAAATCTGGAAGAGTCCATCGATCCTGTGCTAGGACCCCTGCTGGGGAGAGAAGTCATTAAGAAAGGACG
Seq C2 exon
GTTCATTAAAATCGGAGACAAAGAGTGTGAGTATAACCCCAGGTTCCGGCTCATCCTTCACACCAAGCTGGCCAACCCTCACTACCAACCGGAGCTGCAAGCTCAGGCCACCCTGATCAATTTCACCGTGACCAGGGAAGGCCTGGAGGACCAGCTGCTGGCCGCAGTGGTCAGCATGGAGAGACCCGATCTGGAGCAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'73-82,'73-81,74-82
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(28.5=82.3)
A:
PF127812=AAA_9=FE(18.0=100)
C2:
PF127812=AAA_9=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGATGGATGATGCCGAC
R:
GAGCCGGAACCTGGGGTTATA
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development