MmuEX0015119 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65718699-65725528:-
Coord C1 exon
chr11:65725293-65725528
Coord A exon
chr11:65720342-65720464
Coord C2 exon
chr11:65718699-65718903
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGCCTAACTTGCTCCTCAGCTG
3' ss Score
6.61
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTTCCCATTCCAACCACCCCAACTCTGGACCCCCTGAGGATGCTAACCGATGATGCTGAAGTGGCTGCCTGGCAGAATGAGGGTCTCCCTGCTGACCGCATGTCCATGGAGAATGCTACCATCCTCATCAACTGTGAGCGCTGGCCTCTCATGGTCGACCCTCAACTGCAAGGCATTAAATGGATCAAGAACAAATATGGAGAAGAACTCCGGGTCACCCAGATTGGCCAAAAGGG
Seq A exon
CTGCCTTCAAACCATAGAGCGAGCCCTGGAAGCTGGAGATGTGGTACTGATTGAGAACCTTGAGGAGTCCATTGATCCCGTCCTGGGACCTCTGCTTGGGAGAGAAGTCATTAAGAAAGGACG
Seq C2 exon
GTTTATCAAGATTGGAGACAAGGAGTGTGAATTCAATCCCAAGTTCCGGCTCATCCTTCATACCAAGCTGGCCAACCCTCACTACCAGCCTGAGCTGCAGGCTCAGGCTACCCTGATCAACTTCACGGTGACCAGGGATGGCCTGGAGGACCAGCTGCTGGCTGCTGTGGTCAGCATGGAGAGACCAGACCTGGAACAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF127772=MT=PD(3.5=7.6),PF151201=DUF4561=PD(20.0=26.6),PF097314=Mitofilin=PD(0.1=0.0),PF127812=AAA_9=PU(64.4=82.3)
A:
PF127812=AAA_9=FE(18.0=100)
C2:
PF127812=AAA_9=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGATGATGCTGAAGTGGC
R:
GAAGGATGAGCCGGAACTTGG
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: