HsaEX6021125 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11874949-11881413:+
Coord C1 exon
chr17:11874949-11875184
Coord A exon
chr17:11880078-11880200
Coord C2 exon
chr17:11881209-11881413
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTCATACTTGTTTCCCTAGCTA
3' ss Score
6.71
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACTCCCATTCCAGTCACCCCAGCCCTGGATCCCCTGAGGATGCTGATGGATGATGCTGACGTGGCTGCCTGGCAGAACGAGGGCCTCCCAGCCGACCGCATGTCCGTGGAGAATGCCACCATTCTCATCAACTGTGAGCGCTGGCCACTCATGGTTGACCCTCAGCTACAAGGCATCAAATGGATCAAGAATAAATATGGTGAAGATCTCCGGGTCACGCAGATTGGTCAGAAAGG
Seq A exon
CTACCTTCAAATCATAGAGCAGGCCCTGGAAGCTGGAGCTGTGGTGCTGATTGAAAATCTAGAGGAGTCCATTGATCCTGTTCTGGGACCCCTGCTTGGGAGAGAAGTCATTAAAAAAGGACG
Seq C2 exon
ATTCATTAAAATTGGAGACAAAGAATGTGAATACAATCCCAAGTTCCGGCTCATCCTCCACACCAAGCTGGCTAATCCTCACTACCAGCCTGAGCTGCAGGCTCAGGCCACCCTGATCAACTTCACCGTGACCAGGGATGGCCTGGAGGACCAGTTGCTGGCCGCTGTGGTCAGCATGGAGAGGCCAGACTTGGAGCAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'102-91,'102-90,103-91=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF127772=MT=PD(2.9=6.3),PF097314=Mitofilin=PD(1.2=1.3),PF127812=AAA_9=PU(61.3=82.3)
A:
PF127812=AAA_9=PD(37.7=95.2)
C2:
PF127812=AAA_9=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATCAACTGTGAGCGCTG
R:
CGGTGAAGTTGATCAGGGTGG
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains