RnoEX6047742 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52412573-52417159:-
Coord C1 exon
chr10:52416924-52417159
Coord A exon
chr10:52414266-52414388
Coord C2 exon
chr10:52412573-52412777
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTACCTAACTTGTTCCTCAGCTG
3' ss Score
6.57
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTTCCCATTCCAACCACCCCAACCCTGGACCCCCTGAAGATGCTAACTGATGATGCTGATGTGGCTACCTGGCAGAATGAGGGTCTCCCTGCTGACCGAATGTCCATGGAGAATGCCACCATCCTCATCAACTGTGAGCGCTGGCCACTCATGGTCGACCCTCAACTGCAAGGCATCAAATGGATCAAGAACAAATATGGGGAAGAACTCCGTGTCACACAGATCGGCCAAAAAGG
Seq A exon
CTGCCTTCAGACCATAGAGCGTGCTCTGGAAGCTGGAGATGTGGTGCTAATTGAGAACCTTGAGGAGTCCATTGATCCTGTCCTGGGACCTTTGCTTGGGAGAGAAGTCATTAAGAAAGGACG
Seq C2 exon
GTTCATTAAGATTGGAGACAAGGAATGTGAATTCAATCCCAAGTTCCGGCTCATCCTTCACACCAAGCTGGCCAACCCTCACTACCAGCCTGAGCTGCAGGCTCAGGCCACCCTGATCAACTTCACAGTGACCAGGGATGGCCTGGAAGACCAGCTGCTAGCTGCTGTAGTCAGCATGGAGATACCAGACCTGGAGCATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'77-71,'77-70,78-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(28.5=82.3)
A:
PF127812=AAA_9=FE(18.0=100)
C2:
PF127812=AAA_9=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGAGAATGCCACCATCC
R:
GAAGTTGATCAGGGTGGCCTG
Band lengths:
257-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]