DreEX6020703 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10363203-10365763:-
Coord C1 exon
chr6:10365570-10365763
Coord A exon
chr6:10363866-10364014
Coord C2 exon
chr6:10363203-10363330
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGAA
3' ss Score
9.55
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
ACAATGAGCTTCACTGATGAGTTTCGTGGTCTGGATCGGGACATTGAGGGTTCTCCAAAACGCTGGAAGAAAATGGTGGAGTCAGAGTGTCCAGAAAAAGAGAAACTCCCTCAGGAATGGAAAAGCAAGAGTTCACTCCAGAAACTCATCCTTCTTAGGGCTCTGCGACCTGACCGCATGACGTACGCTGTTCG
Seq A exon
GAACTTTGTGGAAGAGAAACTTGGTGTGCAGTACACAGAGGGCAGAAAGATGGAATTTGCACGTTCGTTCAAAGAGTGTGGTCCTGCTTCCCCTGTATTCTTCATCCTGTCCCCTGGAGTGGACCCACTAAAAGATGTCGAGTCCCTGG
Seq C2 exon
GTAAAAAACTTGGCTTCACTATAGACCTGGGGAAGCTTCATAATGTGTCTCTAGGGCAGGGCCAGGAATCTGTGGCTGAACTTGCCATGGAAAAGGCCTCGAGAGAAGGCCACTGGGTCATTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'68-71,'68-70,69-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.1=100)
A:
PF0302810=Dynein_heavy=FE(7.1=100)
C2:
PF0302810=Dynein_heavy=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTCTCCAAAACGCTGGAA
R:
GCCTTCTCTCGAGGCCTTTTC
Band lengths:
257-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]