BtaEX6026592 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30757840-30760352:+
Coord C1 exon
chr4:30757840-30758033
Coord A exon
chr4:30759225-30759373
Coord C2 exon
chr4:30760225-30760352
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGCATTTTTTTTTTTTACAGGAA
3' ss Score
9.78
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCGGTCGCCCTCATGGAAGAGTTTCGAGGCCTCGACCGAGATGTGGAAGGATCTGCCAAGCAGTGGAGGAAGTGGGCAGAATCCGAGTGTCCAGAAAAGGAAAAGTTGCCACAAGAATGGAAGAAGAAAAGTTTAATACAGAAGCTGATTATTTTGAGAGCAATGCGCCCTGACAGAATGACATATGCTCTCAG
Seq A exon
GAATTTCGTGGAGGAGAAACTGGGTGCCAAGTATGTAGAGAGGACCAGATTGGACTTGGTTAAAGCATTTGAGGAGAGCAGCCCCGCCACCCCCATATTCTTCATCCTCTCTCCAGGAGTAGATGCCCTCAAAGACCTGGAGATACTGG
Seq C2 exon
GCAAAAGACTGGGCTTTACGATCGACTCTGGAAAATTCCACAACGTGTCTTTAGGACAAGGGCAGGAGATGGTGGCAGAAACGGCCCTGGAGAAGGCTTCCAGAGAAGGACACTGGGTCATACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'85-92,'85-91,86-92=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(32.5=100)
A:
PF0302810=Dynein_heavy=FE(25.4=100)
C2:
PF0302810=Dynein_heavy=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGACCGAGATGTGGAAGGA
R:
CGTTTCTGCCACCATCTCCTG
Band lengths:
247-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]