DreEX6040423 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19399422-19400139:-
Coord C1 exon
chr16:19399946-19400139
Coord A exon
chr16:19399639-19399787
Coord C2 exon
chr16:19399422-19399549
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTAACAGAAA
3' ss Score
11.03
5' ss Seq
TTGGTAGAC
5' ss Score
-0.58
Exon sequences
Seq C1 exon
AGCATCTCCATGCAGGATGCATTCAGAGGTCTGGACAGGGATGTTGAAGGGTCTGCCAAGCGCTGGAAGAAACTGGTGGAGTCTGAGTGTCCAGAAAGAGAGCGGTTCCCTCAGGACTGGAAGACCAAGAGCCCTCTCCAGAGACTCATCATTCTAAGAGCGATCCGGCCTGACAGGATGACCTATGCTCTCCG
Seq A exon
AAATTTTATTGAGGACAGTTTGGGACCCAAGTATGTGCACATCAGTCATATGGAGTTTGAAAAATGTTTTGAGGAGTGCAGTCCAACAACACCAGTGTTCTTCATCCTTTCTCCTGGAGTCAATCCGGTCAAAGATGTAGAAAAACTTG
Seq C2 exon
GGCTGAAGCTTGGCTTTACCACAGACAGAGGGAACTTCCATAATGTGTCCTTAGGTCAAGGACAAGAAACTGTAGCTGAAATAGCGTTGGAGACCGCAGCTAAAAATGGACATTGGGTCATGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'47-53,'47-52,49-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.1=100)
A:
PF0302810=Dynein_heavy=FE(7.1=100)
C2:
PF0302810=Dynein_heavy=FE(6.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGATGTTGAAGGGTCTGC
R:
GCGGTCTCCAACGCTATTTCA
Band lengths:
256-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]