RnoEX6030097 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145816730-145819195:-
Coord C1 exon
chr6:145819002-145819195
Coord A exon
chr6:145817681-145817829
Coord C2 exon
chr6:145816730-145816857
Length
149 bp
Sequences
Splice sites
3' ss Seq
CATGTTCTTTTCTTAAACAGAAA
3' ss Score
9.76
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GCAGTCGCCCTCATGGAGGAATTCCGAGGCCTAGACCGAGATGTGGAAGGATCTGCCAAGCAGTGGAGGAAATGGGTAGAGTCCGAGTGCCCGGAAAAAGAAAAGTTACCGCAAGAATGGAAGAAGAAAAGTTTAATACAGAAACTGATTATTTTGAGAGCAGTGCGGCCTGACAGGATGACATATGCCCTGAG
Seq A exon
AAATTTTGTAGAGGAGAAGCTAGGTACGAAGTACGTGGAGAGAACGAGATTGGATCTGGGTAAAGCATTTGGAGAAAGCAGCCCAGGCACCCCAGTGTTTTTCATCCTGTCCCCAGGCGTTGATGCCCTTAAAGACTTAGAGGTGCTTG
Seq C2 exon
GCAAAAGGCTGGGATTTACGATTGACTCTGGAAAATTCCACAATGTGTCTCTAGGGCAAGGTCAGGAACTAGTGGCAGAAATGGCGCTGGAGAAAGCAGCCATTGGAGGACACTGGGTCTTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'93-95,'93-94,94-95=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.1=100)
A:
PF0302810=Dynein_heavy=FE(7.1=100)
C2:
PF0302810=Dynein_heavy=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATTCCGAGGCCTAGACC
R:
GCCACTAGTTCCTGACCTTGC
Band lengths:
254-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]