DreEX6023575 @ danRer10
Exon Skipping
Gene
ENSDARG00000005565 | entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:ZFIN;Acc:ZDB-GENE-040724-142]
Coordinates
chr6:41048978-41050637:+
Coord C1 exon
chr6:41048978-41049095
Coord A exon
chr6:41050195-41050345
Coord C2 exon
chr6:41050478-41050637
Length
151 bp
Sequences
Splice sites
3' ss Seq
TATGTTTTTATCTTCAATAGGTG
3' ss Score
9.98
5' ss Seq
AAAGTGAAT
5' ss Score
0.76
Exon sequences
Seq C1 exon
TTCGGGATTGTTTTTGATGCCGGCTCCAGCCACACTGCCCTTTTCCTGTACCAGTGGCAGGGAAACAAAGAAAACAACACTGGAATCGTGTCGCAGAAACAGAGCTGCGATGTGGATG
Seq A exon
GTGATGGCATATCAAGCTATGTCCAGAACCCTGCAGGAGCGGGAGAAAGTCTGAAGAAATGCTTGGACATTGCTAAGGCAGCAATACCAACAGAACAGCAGAAGTCCACACCTGTGTACCTCGGTGCCACTGCTGGCATGCGGCTTCTAAA
Seq C2 exon
CTTACAGAACCAAACTCAATCAGACAGCATCCTTGCAGAGGTCGCCAAAACAATTCAAACTTACCCATTTGATTTCCGAGGAGCCAGAATACTCACAGGGATGGAGGAGGGAGCTTATGGCTGGATCACCACCAACTACCTCTTGGAGAGCTTTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005565-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(24.8=100)
A:
PF0115012=GDA1_CD39=FE(11.6=100)
C2:
PF0115012=GDA1_CD39=PD(36.9=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTGTTTTTGATGCCGGC
R:
AGAGGTAGTTGGTGGTGATCCA
Band lengths:
258-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]