DreEX6024294 @ danRer10
Exon Skipping
Gene
ENSDARG00000076787 | angpt4
Description
angiopoietin 4 [Source:ZFIN;Acc:ZDB-GENE-110104-1]
Coordinates
chr6:52024371-52030818:+
Coord C1 exon
chr6:52024371-52024537
Coord A exon
chr6:52025302-52025432
Coord C2 exon
chr6:52030200-52030818
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTTTACCTCCAGACT
3' ss Score
9.92
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGATTTGGTGATCCTAGTGGAGAGCACTGGTTAGGTAATGAGGCCATTCACCTGATCACCAGTCAAGGCCAGTACTCCCTTCGAGTGGAACTGAAGGACTGGGAGGAGAACGGAGCATATGCACTGTATGACAAATTCCAGCTGACCAGTGAAAAACAGCAGTACAG
Seq A exon
ACTCTTGCTAGGGAGCCATAGTGGAACAGCAGGACAAAAAAGCAGCTTAGCATTAAACGGCACAGGCTTCAGCACTCGCGATGCCGACAACGACAAGTGCGAGTGCAAGTGTGCTCTCATGATGACTGGAG
Seq C2 exon
GCTGGTGGTTTGAAGCTTGCGGTATGTCCAACCTGAACGGCATCTACTACACCATCGGTCACAACATCCGCAAACTCAATGGCATTAAATGGCATCACTTCCGAGGACCCAGTTATTCACTCCAGTCCACTTCCATGATGATCCGACCCACTGATTTCTAAAGCTAATGAACCAGCATTTCCACAAGACTGTCGTACTGTAGGACAGTGGAACCAGATTTAAAAAAGCAATGTAATGGATGAACAGTGATGATTTACTGCAAATCCGACTGCTGGAATGGACAAAAGCATTCATCTATGCCAACATTTCCATTTTAGACATAACTGTATAAAGACGCTTCACCTTCACAGCTGCTCTAGCGTGAATTCATTCGTCTCTTATAACCTGAAACATTCTCAGTGACGGAGACTTCTGCTGAACAAGGATCGTCGCTGTGCAATGAAATTATTCCAAAGGAAAACCTTTTGACCTTGAGGAGGCTGAAGATTTTGGAGCAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076787-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
PF0014713=Fibrinogen_C=FE(20.5=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCATTCACCTGATCACC
R:
AACTGGGTCCTCGGAAGTGAT
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]