RnoEX0009301 @ rn6
Exon Skipping
Gene
ENSRNOG00000005008 | Angpt4
Description
angiopoietin 4 [Source:RGD Symbol;Acc:1307539]
Coordinates
chr3:147449445-147455670:+
Coord C1 exon
chr3:147449445-147449611
Coord A exon
chr3:147453618-147453748
Coord C2 exon
chr3:147454836-147455670
Length
131 bp
Sequences
Splice sites
3' ss Seq
CACCTCACCACGGCCTCCAGCCT
3' ss Score
0.15
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGTTTTGGTAATGTGGCTAGAGAACACTGGCTGGGCAATGAGGCTGTGCACAGCCTCACCAGCAGAACGGCCTACTTGCTACGTGTGGAGCTGCATGACTGGGAAGGCCACCAGACCTCCATCCAGTATGAGAACTTCCAGCTGGGCAGCGAGAGGCAGCGGTACAG
Seq A exon
CCTCTCTGTGAATGACAGCAGCATCTCAGCAAGGCTCAAGAACAGCCTGGCTCCTCAGGGCACCAAGTTCAGTACCAAAGACATGGACAATGATAACTGCATGTGCAAATGTGCTCAGATGCTGTCTGGAG
Seq C2 exon
GGTGGTGGTTTGACGCCTGTGGCCTCTCCAACCTCAACGGCATCTACTATCCGGTTCATCAACACTTGCATAAGATCAATGGCATCCGCTGGCACTACTTCCGAGGCCCCAGCTACTCACTGCATGGCACACGCATGATGCTGCGGCCAATGGGTGCCTGACACACAGCCCTACAGAGACTGATGCTCAAGGAGGATTCTCAACCCAGATGGCTCTGTGCAAGCTGGATCCTGCCCAGAAGTCAGTGCCCAGGGCTCATCTTGACATTCCGGGACACCAGAACCAGCTTATCTTGCACCTGAATTATGAGAGTCACTTGCCTCCCTGTGCCCCTCTAGTGTGAAATGCTGGGTGCTTGAGGCACCTGCCTCTGTGGGACCCATGCTCCTGCTGCATGCAGGGGCTCCCTGTCACGGTCTGAGGCAGACTGAACTTGACTCAGAGGGAGGGGTTGCAGCAGGCGGGGAAAATCTTGCAGACTGGGGTGCCCTCCTCCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005008_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
PF0014713=Fibrinogen_C=FE(20.5=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCTAGAGAACACTGGCT
R:
CCAGCGGATGCCATTGATCTT
Band lengths:
248-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]