BtaEX6065865 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021811 | ANGPTL4
Description
Bos taurus angiopoietin 4 (ANGPT4), mRNA. [Source:RefSeq mRNA;Acc:NM_001076483]
Coordinates
chr13:60766403-60773778:+
Coord C1 exon
chr13:60766403-60766569
Coord A exon
chr13:60771819-60771949
Coord C2 exon
chr13:60772897-60773778
Length
131 bp
Sequences
Splice sites
3' ss Seq
CACCTCCGGGTGGCCTCCAGGCT
3' ss Score
5.45
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGCTTTGGCAACCCAGCCGGAGAGCACTGGCTAGGCAATGAAGTGGTGCACCAGCTCACCAGCAGGGCAACCTACTCTCTGCGAGTGGAGCTGCAAGATTGGGAAGGCAACGAGGCCTACGCCCAGTATGAGCACTTCCAGCTGGGCAGCGAGGCGCAGCTGTACAG
Seq A exon
GCTTTCTCTGAGTGGGTACAGTGGCTCAGCAGGGCGCCAGAGCAGCCTGGTCCTCCAGGGCACCAACTTCAGCACGCGCGACGCAGACAATGACAACTGCCTCTGCAAGTGCGCCCAGATGCTGTCCGGAG
Seq C2 exon
GGTGGTGGTTTGACGCCTGTGGCCTCTCAAACCTCAATGGCATCTACTATCCAGCCCGTCACCATGTGCGCAAGCTCAACGGCATCCGCTGGCACTACTTCCAGGGCCCCAGCTACTCGCTGCGCACCACTCGCATGATGGTGCGCCCCTCGGGCATCTAAGGGGCAGCCACGCCTGGAGGCTGGTCCCAAGGGAGGACATGGCCATGGTATCCCCTGGACAAGCTGGACTCGAACACAGGACACAATGCCAGGACCTTGTCCCGGACAGCCTGGGGGTCCCCTGAGCCAGCCCTCCTTGCCCCAGGAGTCCAGAAGAGTCGCCTCTAGCCCTTTTCCCCTCAAGTTGTGAAATGGTGGACATTTGGGGGTTCCTGCCTCTTCAGTGTCCCTCTTCCTCTTCCCTCCTGCCTCCTGCAGGGGCCTCCTGCCCACCTGAGGGCTGCAGTATCCTGAACAAGCGGAGAGCAGATTTAACTGGGCTCTGCAAAGGAATATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021811-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
PF0014713=Fibrinogen_C=FE(20.5=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGAGCACTTCCAGCTGGG
R:
ATACCATGGCCATGTCCTCCC
Band lengths:
254-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]