HsaEX6076784 @ hg19
Exon Skipping
Gene
ENSG00000101280 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:487]
Coordinates
chr20:853296-858970:-
Coord C1 exon
chr20:858804-858970
Coord A exon
chr20:854927-855057
Coord C2 exon
chr20:853296-853763
Length
131 bp
Sequences
Splice sites
3' ss Seq
CACCTCTGGGTGGCCTCCAGGCT
3' ss Score
5.44
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGCTTCGGAGACCCAGCTGGGGAGCACTGGCTGGGCAATGAAGTGGTGCACCAGCTCACCAGAAGGGCAGCCTACTCTCTGCGTGTGGAGCTGCAAGACTGGGAAGGCCACGAGGCCTATGCCCAGTACGAACATTTCCACCTGGGCAGTGAGAACCAGCTATACAG
Seq A exon
GCTTTCTGTGGTCGGGTACAGCGGCTCAGCAGGGCGCCAGAGCAGCCTGGTCCTGCAGAACACCAGCTTTAGCACCCTTGACTCAGACAACGACCACTGTCTCTGCAAGTGTGCCCAAGTGATGTCTGGAG
Seq C2 exon
GGTGGTGGTTTGACGCCTGTGGCCTGTCAAACCTCAACGGCGTCTACTACCACGCTCCCGACAACAAGTACAAGATGGACGGCATCCGCTGGCACTACTTCAAGGGCCCCAGCTACTCACTGCGTGCCTCTCGCATGATGATACGGCCTTTGGACATCTAACGAGCAGCTGTGCCAGAGGCTGGACCACACAGGAGAAGCTCGGACTTGGCACTCCTGGACAACCTGGACCCAGATGCAAGACACTGTGCCACCGCCTTCCCTGACACCCTGGGCTTCCTGAGCCAGCCCTCCTTGACCCAGAAGTCCAGAAGGGTCATCTGCCCCCCAACTCCCCTCCGTCTGTGACATGGAGGGTGTTCGGGGCCCATCCCTCTGATGTAGTCCTCGCCCCTCTTCTCTCCCTCCCCCTTCAGGGGCTCCCTGCCTGAGGGTCACAGTACCTTGAATGGGCTGAGAACAGACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101280-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
PF0014713=Fibrinogen_C=FE(20.5=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGGCAGCCTACTCTCTG
R:
CCGTATCATCATGCGAGAGGC
Band lengths:
253-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)